Conference abstracts
Shakya, S. K; Knaus, B.J; and Grünwald, N.J. Assessing the bias in gene content from resequenced Phytophthora infestans strains where reads do not map to the reference genome, APS 2019, Cleveland, Ohio
Shakya, S. K; Grünwald, N.J; Weiland, J; Fieland, V; Knaus, B.J; Jung, M.H; Maia, Cristiana; Drenth, A; Guest, D.I; Liew, E.C.Y; Crane, Colin, Scanu, B and Jung, T. Analysis of global populations of Phytophthora cinnamomi suggests presence of two dominant clonal lineages and evidence of sex in Southeast Asia.ICPP 2018
Knaus, B.J, Tabima, J.F, Shakya, S. K, Judelson, H.S, Grünwald, N.J.Copy number variation appears increased in clonal lineages over sexual lineages of Phytophthora infestans. ICPP, Boston, MA 2018
Shakya, S. K, Knaus, B.J, Tabima, J.F, Judelson, H.S, Grünwald, N.J. Presence-absence polymorphism and balancing selection of RxLR genes in Phytophthora clade 1c species. APS 2017, San Antonio, Texas.
Knaus, B.J, Tabima, J.F, Shakya, S. K, Judelson, H.S, Grünwald, N.J.Genic copy number variation reveals an unexpected mosaic of varying ratios of diploidy and triploidy among isolates of Phytophthora infestans. APS 2017, San Antonio, Texas
Shakya, S. K, Larsen, M.M, Cuenca, M.M, Lozoya-Saldaña, H, Grünwald, N.J. 2016. Microsatellite genotyping reveals high genetic diversity in Phytophthora infestans from Mexico. APS 2016, Tampa, Florida
van Bruggen, A.H.C., Shakya, S. K., Narouei Khandan, H.A., Andrade-Piedra, J.L., Goss, E.M., and Dufault, N.S. 2015. A new mechanistic model to simulate effects of diurnal temperature oscillations on potato late blight development. APS 2015, Pasadena, California
Shakya, S. K, EM Goss, NS Dufault, AHC van Bruggen. 2014. Effects of diurnal temperature oscillations on potato late blight. North American Late Blight Symposium. Aug 8-9. Minneapolis